Scientific Computing for Systems Biology - key publications

Key publications of MAS3.2 On Parameter Estimation and Determinability for Drosophila Gap Gene Circuits, Maksat Ashyraliyev, Johannes Jaeger and Joke G. Blom BMC Systems Biology, 2:83 (2008) Parameter estimation for biochemical models, M. Ashyraliyev, Y. Fomekong Nanfack, J.A. Kaandorp, J.G. Blom FEBS Journal (2008) Modelling genetic regulation of growth and form in a branching sponge,
Key publications of MAS3.2
  1. On Parameter Estimation and Determinability for Drosophila Gap Gene Circuits,
    Maksat Ashyraliyev, Johannes Jaeger and Joke G. Blom
    BMC Systems Biology, 2:83 (2008)
  2. Parameter estimation for biochemical models,
    M. Ashyraliyev, Y. Fomekong Nanfack, J.A. Kaandorp, J.G. Blom
    FEBS Journal (2008)
  3. Modelling genetic regulation of growth and form in a branching sponge,
    Jaap A. Kaandorp, Joke G. Blom, Jozef Verhoef, Max Filatov, M. Postma and Werner E.G. Mueller
    Proceedings of the Royal Society B, 275:1651:2569-2575 (2008)
  4. On the Numerical Solution of Diffusion-Reaction Equations with Singular Source Terms,
    M. Ashyraliyev, J.G. Blom, J.G. Verwer,
    J. Comp. Appl. Math, 216:1:20-38 (2008).
  5. Efficient parameter estimation for spatio-temporal models of pattern formation: Case study of Drosophila melanogaster,
    Yves Fomekong Nanfack, Jaap Kaandorp, and Joke Blom
    Bioinformatics, doi:10.1093/bioinformatics/btm433 (2007).
  6. Computational methods for diffusion-influenced biochemical reactions,
    Maciej Dobrzyński, Jordi Vidal Rodríguez, Jaap A. Kaandorp, and Joke G. Blom
    Bioinformatics
    , 23:15:1969--1977 (2007).
  7. On the Numerical Solution of Diffusion-Reaction Equations with Singular Source Terms,
    M. Ashyraliyev, J.G. Blom, J.G. Verwer,
    J. Comp. Appl. Math, doi:10.1016/j.cam.2007.04.017 (2007)
  8. Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransfe rase (PTS) pathway in Escherichia coli,
    Jordi Vidal Rodríguez, Jaap A. Kaandorp, Maciej Dobrzyński, and Joke G. Blom
    Bioinformatics, 22:15:1895--1901 (2006).
  9. A continuum model of lipid bilayers,
    J.G. Blom and M.A. Peletier,
    European Jnl of Applied Mathematics, 15:4:487--508 (2004).
  10. Why the Phosphotransferase System of Escherichia Coli Escapes the Diffusion Limitation of Signal Transduction, Transport and Metabolism that Confronts Mammalian Cells,
    Christof Francke, Pieter W. Postma, Hans V. Westerhoff, Joke G. Blom and Mark A. Peletier,
    Biophys. J. 85: 612- 622 (2003).