Willem Jan Palenstijn

Full Name: W.J. Palenstijn
Function(s): Scientific Software Developer

Email: W.J.Palenstijn@cwi.nl
Telephone: +31 20 592 4030
Room: L009
Department(s): Computational Imaging

Biography

After obtaining a PhD in number theory from Universiteit Leiden, I am now working on high performance computing for tomography, in particular using GPUs to accelerate reconstruction algorithms. I am the lead developer of the open-source ASTRA Tomography Toolbox.

Publications

Kostenko, A, Palenstijn, W.J, Coban, S.B, Hendriksen, A.A, van Liere, R, & Batenburg, K.J. (2020). Prototyping X-ray tomographic reconstruction pipelines with FleXbox. SoftwareX, 11. doi:10.1016/j.softx.2019.100364
Buurlage, J, Marone, F, Pelt, D.M, Palenstijn, W.J, Stampanoni, M, Batenburg, K.J, & Schlepütz, C.M. (2019). Real-time reconstruction and visualisation towards dynamic feedback control during time-resolved tomography experiments at TOMCAT. Nature Scientific Reports, 9(1). doi:10.1038/s41598-019-54647-4
Bender, H, Richard, O, Kundu, P, Favia, P, Zhong, Z, Palenstijn, W.J, … Schoenmakers, R. (2019). Combined STEM-EDS tomography of nanowire structures. Semiconductor Science and Technology, 34(11). doi:10.1088/1361-6641/ab4840
Hendriksen, A.A, Pelt, D.M, Palenstijn, W.J, Coban, S.B, & Batenburg, K.J. (2019). On-the-fly machine learning for improving image resolution in tomography. Applied Sciences, 9(12). doi:10.3390/app9122445
Zhong, Z, Palenstijn, W.J, Viganò, N.R, & Batenburg, K.J. (2018). Numerical methods for low-dose EDS tomography. Ultramicroscopy, 194, 133–142. doi:10.1016/j.ultramic.2018.08.003
Zhong, Z, Palenstijn, W.J, Adler, J, & Batenburg, K.J. (2018). EDS tomographic reconstruction regularized by total nuclear variation joined with HAADF-STEM tomography. Ultramicroscopy, 191, 34–43. doi:10.1016/j.ultramic.2018.04.011
Buurlage, J, Kohr, H, Palenstijn, W.J, & Batenburg, K.J. (2018). Real-time quasi-3D tomographic reconstruction. Measurement Science and Technology, 29(6). doi:10.1088/1361-6501/aab754
Zhong, Z, Aveyard, R, Rieger, B, Bals, S, Palenstijn, W.J, & Batenburg, K.J. (2018). Automatic correction of nonlinear damping effects in HAADF–STEM tomography for nanomaterials of discrete compositions. Ultramicroscopy, 184, 57–65. doi:10.1016/j.ultramic.2017.10.013
Sentosun, K, Lobato, I, Bladt, E, Zhang, Y, Palenstijn, W.J, Batenburg, K.J, … Bals, S. (2017). Artifact reduction based on sinogram interpolation for the 3D reconstruction of nanoparticles using electron tomography. Particle & Particle Systems Characterization, 34(12). doi:10.1002/ppsc.201700287
Trull, A.K, van der Horst, J, Palenstijn, W.J, van Vliet, L.J, van Leeuwen, T, & Kalkman, J. (2017). Point spread function based image reconstruction in optical projection tomography. Physics in Medicine and Biology, 62(19), 7784–7797. doi:10.1088/1361-6560/aa8945