Joost Batenburg

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Publications

• Jinnai, H, Higuchi, T, Zhuge, X, Kumamoto, A, Batenburg, K.J, & Ikuhara, Y. (2017). Three-dimensional visualization and characterization of polymeric self-assemblies by Transmission Electron Microtomography. Accounts of Chemical Research, 50(6), 1293–1302. doi:10.1021/acs.accounts.7b00103
• Aveyard, R, Zhong, Z, Batenburg, K.J, & Rieger, B. (2017). Optimizing experimental parameters for the projection requirement in HAADF-STEM tomography. Ultramicroscopy, 177, 84–90. doi:10.1016/j.ultramic.2017.03.009
• Zhuge, X, Jinnai, H, Dunin-Borkowski, R.E, Migunov, V, Bals, S, Cool, P, … Batenburg, K.J. (2017). Automated discrete electron tomography – Towards routine high-fidelity reconstruction of nanomaterials. Ultramicroscopy, 175, 87–96. doi:10.1016/j.ultramic.2017.01.009
• Zhong, Z, Goris, B, Schoenmakers, R. (Remco), Bals, S, & Batenburg, K.J. (2017). A bimodal tomographic reconstruction technique combining EDS-STEM and HAADF-STEM. Ultramicroscopy, 174, 35–45. doi:10.1016/j.ultramic.2016.12.008
• Palenstijn, W.J, Bédorf, J, Sijbers, J, & Batenburg, K.J. (2016). A distributed ASTRA toolbox. Advanced Structural and Chemical Imaging, 2(1). doi:10.1186/s40679-016-0032-z
• Goris, B, Meledina, M. (Maria), Turner, S. (Stuart), Zhong, Z, Batenburg, K.J, & Bals, S. (2016). Three dimensional mapping of Fe dopants in ceria nanocrystals using direct spectroscopic electron tomography. Ultramicroscopy, 171, 55–62. doi:10.1016/j.ultramic.2016.08.017
• Van Nieuwenhove, V., V, Van Eyndhoven, G, Batenburg, K.J, Buls, N, Vandemeulebroucke, J, De Beenhouwer, J, & Sijbers, J. (2016). Local attenuation curve optimization framework for high quality perfusion maps in low-dose cerebral perfusion CT. Medical Physics, 43(12), 6429–6438. doi:10.1118/1.4967263
• van Aarle, W, Palenstijn, W.J, Cant, J, Janssens, E, Bleichrodt, F, Dabravolski, A, … Sijbers, J. (2016). Fast and flexible X-ray tomography using the ASTRA toolbox. Optics Express, 24(22), 25129–25147. doi:10.1364/OE.24.025129
• Viganò, N, Batenburg, K.J, & Ludwig, W. (2016). An orientation-space super sampling technique for six-dimensional diffraction contrast tomography. Fundamenta Informaticae, 146(2), 219–230. doi:10.3233/FI-2016-1383
• Pelt, D.M, Gürsoy, D, Palenstijn, W.J, Sijbers, J, De Carlo, F, & Batenburg, K.J. (2016). Integration of TomoPy and the ASTRA toolbox for advanced processing and reconstruction of tomographic synchrotron data. Journal of Synchrotron Radiation, 23(Part 3), 842–849. doi:10.1107/S1600577516005658

Projects

• Mathematics and Algorithms for 3D Imaging of Dynamic Processes

• Non-destructive 3D spectral imaging: applications in the poultry industry

• Real-Time 3D Tomography

• The See-Through Museum

• AMTIC
  Automated multi-modal tomography for sub-22nm IC nodes

• VOXEL
  Volumetric medical x-ray imaging at extremely low dose

Professional activities

• professor
  Universiteit Leiden

• chair
  International Association for Pattern Recognition - [IAPR] - Technical Committee on Discrete Geometry

• chair
  EU COST Action EXTREMA

• editor
  Associate Editor of Image Processing Online (IPOL)

• editor
  Associate Editor of Journal of Mathematical Imaging and Vision (Springer)

• editor
  Associate Editor of IEEE Transactions on Computational Imaging

• awarded
  Philips Mathematics Prize - March

• awarded
  C.J. Kok Prize - January

• grant
  FWO Visiting Postdoctoral Fellowship

• grant
  FWO Postdoctoral Fellowship

• grant
  Vidi Innovational Research Grant NWO