Description
Leader of the group Computational Imaging: Joost Batenburg.
Our research group is developing the next generation of 3D imaging – enabling scientists to look further into objects of all kinds. Based on mathematics, algorithms and numerical solution techniques, our approach is interdisciplinary, combining aspects of mathematics, computer science and physics. We pride ourselves on the versatility of our solutions, and our algorithms can be applied to a wide range of imaging in science, medicine and industry. In Computational Imaging, it’s our goal to constantly push the boundaries of research. By combining advanced image acquisition, parameter estimation, and discrete tomography algorithms for example, we are able to develop workflows for 3D electron microscopy at atomic resolution.
Vacancies
PhD student, on the subject of "Translation-Driven Development of Deep Learning for Simultaneous Tomographic Image Reconstruction and Segmentation"
Centrum Wiskunde & Informatica (CWI) has a vacancy in the Computational Imaging (CI) research group for a talented PhD student, on the subject of “Translation-Driven Development of Deep Learning for Simultaneous Tomographic Image Reconstruction and Segmentation”.
News
Faster biomedical image processing with CWI research
Alexander Broersen defended his PhD thesis on biomedical visualization on 3 March.
Mathematics to reveal atomic structure wins first Philips Mathematics Prize
Can physicists obtain a 3D image of the positions of all individual atoms inside tiny crystals?
Members
Associated Members
Publications
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Buurlage, J, Marone, F, Pelt, D.M, Palenstijn, W.J, Stampanoni, M, Batenburg, K.J, & Schlepütz, C.M. (2019). Real-time reconstruction and visualisation towards dynamic feedback control during time-resolved tomography experiments at TOMCAT. Nature Scientific Reports, 9(1). doi:10.1038/s41598-019-54647-4
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Der Sarkissian, H.H, Lucka, F, van Eijnatten, M.A.J.M, Colacicco, G, Coban, S.B, & Batenburg, K.J. (2019). A cone-beam X-ray computed tomography data collection designed for machine learning. Scientific Data, 6(1). doi:10.1038/s41597-019-0235-y
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Colman, K.L, de Boer, H.H, Dobbe, J.G.G, Liberton, N.P.T.J, Stull, K.E, van Eijnatten, M.A.J.M, … van der Merwe, A.E. (2019). Virtual forensic anthropology: The accuracy of osteometric analysis of 3D bone models derived from clinical computed tomography (CT) scans. Forensic Science International, 304. doi:10.1016/j.forsciint.2019.109963
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Sero, D, Zaidi, A, Li, J, White, J.D, González Zarzar, T.B.G, Marazita, M.L, … Claes, P. (2019). Facial recognition from DNA using face-to-DNA classifiers. Nature Communications, 10(1). doi:10.1038/s41467-019-10617-y
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Hendriksen, A.A, Pelt, D.M, Palenstijn, W.J, Coban, S.B, & Batenburg, K.J. (2019). On-the-fly machine learning for improving image resolution in tomography. Applied Sciences, 9(12). doi:10.3390/app9122445
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Bossema, F.G, Burger, J.P, Bratton, L, Challenger, A, Adams, R.C, Sumner, P, … Smeets, I. (2019). Expert quotes and exaggeration in health news: A retrospective quantitative content analysis. Wellcome Open Research. doi:10.12688/wellcomeopenres.15147.2
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Viganò, N.R, Martínez Gil, P.M, Herzog, C, de la Rochefoucauld, O, Liere, R.V. (Robert Van), & Batenburg, K.J. (2019). Advanced light-field refocusing through tomographic modeling of the photographed scene. Optics Express, 27(6), 7834–7856. doi:10.1364/OE.27.007834
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Pelt, D.M, Batenburg, K.J, & Sethian, J.A. (2018). Improving tomographic reconstruction from limited data using Mixed-Scale Dense convolutional neural networks. Journal of Imaging, 4(11), 128–128. doi:10.3390/jimaging4110128
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Tick, J, Pulkkinen, A, Lucka, F, Ellwood, R, Cox, B.T, Kaipio, J.P. (Jari), … Tarvainen, T. (2018). Three dimensional photoacoustic tomography in Bayesian framework. The Journal of the Acoustical Society of America, 144(4), 2061–2071. doi:10.1121/1.5057109
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Der Sarkissian, H.H, Viganò, N.R, & Batenburg, K.J. (2018). A data consistent variational segmentation approach suitable for real-time tomography. Fundamenta Informaticae, 163(1), 1–20. doi:10.3233/FI-2018-1729
Software
Current projects with external funding
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Machine learning for large 3D tomographic images ()
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Mathematics and Algorithms for 3D Imaging of Dynamic Processes ()
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Non-destructive 3D spectral imaging: applications in the poultry industry ()
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PPS contract Planmeca ()
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Real-Time 3D Tomography ()
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CT for Art: from Images to Patterns (IMPACT4Art)
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MUltiscale, Multimodal and Multidimensional imaging for EngineeRING (MUMMERING)
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Translation-Driven Development of Deep Learning for Simultaneous Tomographic Image Reconstruction and Segmentation (None)
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Deep learning and compressed sensing for ultrasonic nondestructive testin (PPS Applus RTD)
Related partners
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Naturalis
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Planmeca
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Rijksmuseum Amsterdam