Alexander Schönhuth

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Publications

• Dröge, J, Schönhuth, A, & McHardy, A.C. (2017). A probabilistic model to recover individual genomes from metagenomes. PeerJ Computer Science, 3(e117). doi:10.7717/peerj-cs.117
• Baaijens, J.A, El Aabidine, A.Z, Rivals, E, & Schönhuth, A. (2017). De novo assembly of viral quasispecies using overlap graphs. Genome Research, 27(5), 835–848. doi:10.1101/gr.215038.116
• Dijkstra, L.J, Köster, J, Marschall, T, & Schönhuth, A. (2017). Enhancing Sensitivity And Controlling False Discovery Rate In Somatic Indel Discovery Using A Latent Variable Model. bioRxiv. doi:10.1101/121954
• Ebler, J, Schönhuth, A, & Marschall, T. (2017). Genotyping inversions and tandem duplications. Bioinformatics, btx020, 1–9. doi:10.1093/bioinformatics/btx02
• Dröge, J, Schönhuth, A, & McHardy, A.C. (2016). A probabilistic model to recover individual genomes from metagenomes.
• Martin, M, Patterson, M.D, S. Garg (Shilpa), Fischer, S. (Sarah), Pisanti, N, Klau, G.W, … Marschall, T. (2016). WhatsHap: fast and accurate read-based phasing. bioRxiv.
• The Computational Pan-Genomics Consortium, Marschall, T, Marz, M, Abeel, T, Dijkstra, L.J, Dutilh, B.E, … Schönhuth, A. (2016). Computational pan-genomics: status, promises and challenges. Briefings in Bioinformatics. doi:10.1093/bib/bbw089
• Baaijens, J.A, El Aabidine, A.Z, Rivals, E, & Schönhuth, A. (2016). De Novo Viral Quasispecies Assembly using Overlap Graphs.
• Hehir-Kwa, J.Y, Schönhuth, A, & et al., . (2016). A high-quality human reference panel reveals the complexity and distribution of genomic structural variants. Nature Communications, 7(12989). doi:10.1038/ncomms129
• Marschall, T, & Schönhuth, A. (2016). Discovering and Genotyping Twilight Zone Deletions. In Computational Methods for Next Generation Sequencing Data Analysis (pp. 149–173).

Projects

• Statistical Models for Structural Genetic Variants in the Genome of the Netherlands

Professional activities

• committeeMember
  Member Program Committee - Research on Computational MolecularﾠﾠBiology [RECOMB]

• committeeMember
  Member Program Committee - Intelligent Systems on Molecular Biologyﾠﾠ[ISMB], 2013, 2014, 2016, 2017

• committeeMember
  Member Program Committee - European Conference on ComputationalﾠﾠBiology [ECCB], 2017

• committeeMember
  Member Program Committee - ACM Conference on Bioinformatics,ﾠﾠComputational Biology and Biomedicine [ACM-BCB], 2012, 2017

• chair
  Publicity Chair - Research on Computational MolecularﾠBiology [RECOMB]

• chair
  Program Faculty - Computational Genomics Summer Institute [CGSI],ﾠﾠUCLA

• organizer
  Workshop, "Data Structures in Bioinformatics" [DSB]

• committeeMember
  Founding Member - Consortium, "Computational Pangenomics"

• committeeMember
  Member Consortium - "The Genome of the Netherlands"

• committeeMember
  Member Award Selection Committee - BioSB

• grant
  - Summer Semester Stipends, IPAM, UCLA, 2016, 2017

• grant
  - NWO and KNAW Workshop Grant, including sponsorships from industry